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Living in a Genomic World

Unraveling the Complexity of GWAS Studies



Co Authors:

Rivka L. Glaser
Department of Biology
Stevenson University
rglaser@stevenson.edu

Erin L. Zimmer
Department of Biology
Lewis University
zimmerer@lewisu.edu

Abstract:

This directed case study was developed in order to present genomic data to students, allow them to interpret the impact of genetic variations on phenotype, and to explore precision medicine. Students are introduced to "Josie," a college sophomore who decides to have her genome sequenced after learning about genome-wide association studies (GWAS) in class. As students work  through the case, they learn about the different technologies that can be used in GWAS studies and interpret Josie's results for a subset of genetic markers that affect a range of traits from pharmacogenetics to disease risk alleles and non-pathogenic traits. Students are confronted with ethical issues such as duty to inform, actionable results, and variants of unknown significance (VUS). Students are also asked to reflect on their feelings about getting genomic testing for themselves. An optional activity for advanced students (included in the teaching notes) involves using the Gene database at NCBI to explore variants of the CYP2C9 gene. The case study is appropriate for use in undergraduate genetics or molecular biology classrooms.

Objectives:
  • Define terms such as single nucleotide polymorphisms, intron, and exon.
  • Understand the difference between Mendelian and complex traits.
  • Compare and contrast different sequencing technologies (e.g., microarray, whole genome sequencing, exome sequencing).
  • Explore ethical issues of genetic testing.
  • Analyze and interpret the effect of different types of genetic variation.
  • Reflect on personal feelings about genetic testing.
  • Explain the meaning of risk alleles and variants of unknown significance.
  • Examine the impact of the environment on traits.
Keywords: genetics; genetic testing; genomics; heredity; polygenic traits; SNP; SNPs; intron; exon; GWAS; VUS;
Topical Area: Ethics, Regulatory issues
Educational Level: Undergraduate lower division, Undergraduate upper division
Formats: PDF
Type/Method: Directed, Discussion
Language: English
Subject Headings: Biology (General)   Genetics / Heredity   Medicine (General)   Molecular Biology  
Date Posted: 12/31/2017
Date Modified: N/A
Copyright: Copyright held by the National Center for Case Study Teaching in Science, University at Buffalo, State University of New York. Please see our usage guidelines, which outline our policy concerning permissible reproduction of this work.

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